Since the software is a tool used to operate Ion Trap Mass Spectrometers, "helpful papers" usually focus on the application of this technology. The most foundational paper regarding the technology controlled by this software is the original description of the Thermo Finningan (now Thermo Fisher) Ion Trap.
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: You can access the installation files through the Thermo Fisher Public Downloads portal. Select the Avantage V6 (or latest available) option. Licensing Requirements : thermo avantage software download